P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.

PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.

The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..

A Consensus Docking Plugin for PyMOL

(Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina

(Windows) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina

PyMOL extension to color AlphaFold structures by confidence (pLDDT).

3D hotspot mutation proximity analysis tool

Pymolsnips is a library of PyMOL scripting language code fragments for several popular text editors.

Rapid generation of high-quality structure figures for publication with PyMOL-PUB

A PyMOL plugin for visualizing vibrations in molecules and solids

molecular dynamics simulation and analysis. 分子动力学模拟和分析。

Python code to color a PDB structure based on parameters from a multiple sequence alignment

Pymol-open-source wheels for Python on Windows

A web app to convert a PyMOL PSE file or PDB file to a easy to implement NGL.js view that can be implemented easily on any site

Generate Boltzmann-weighted Sterimol Steric Parameters for Conformationally-Flexible Substituents

This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua

📝✨ Generate supporting information documents for your computational chemistry manuscripts - Documentation: https://esigen.readthedocs.io

Script to facilitate the making of horizontal scripts

A program analyzing 3D protein structures from PDB to generate 2D binding motifs