sra
Here are 51 public repositories matching this topic...
Package for fetching metadata and downloading data from SRA/ENA/GEO
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Sep 17, 2023 - Python
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
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Jan 19, 2024 - Python
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
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Feb 5, 2024 - Python
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
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Mar 30, 2020 - Python
Interactive R package to quantify, analyse and visualise alternative splicing
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May 27, 2024 - R
GEO RNA-seq Experiments Processing Pipeline
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Oct 25, 2019 - R
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
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May 20, 2024 - Python
Bioinformatics analysis of SARS-CoV-2
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Dec 28, 2023 - Perl
PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE allows automatic separation of the data.
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Feb 25, 2023 - Perl
Builds a PEP from SRA or GEO accessions
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Feb 13, 2024 - Jupyter Notebook
A pipeline for viral identification from metagenomic samples
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Oct 15, 2017 - Shell
Access and Format Single-cell RNA-seq Datasets from Public Resources
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May 16, 2024 - R
Work on and around an interactive metadata table for project identification
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Mar 17, 2018 - Python
Sequence Read Archive Classification
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Oct 10, 2023 - Python
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