snvs
Here are 26 public repositories matching this topic...
A method for variant graph genotyping based on exact alignment of k-mers
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Apr 1, 2019 - C++
A somatic mutation signature simulator
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Feb 13, 2020 - Python
Detect and phase minor SNVs from long-read sequencing data
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Dec 28, 2021 - C++
Strelka2 germline and somatic small variant caller
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Dec 29, 2021 - C++
A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.
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Jan 20, 2022 - Python
Determine read depth and variant frequency thresholds to distinguish NGS sequencing errors from true SNPs. Simulates effect of changing per-site read depth and variant frequency on accuracy of genetic diversity measures (pi, alterante allele frequency, shannon diversity).
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Jun 16, 2022 - Python
Microassembly based somatic variant caller for NGS data
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Jun 23, 2022 - C
Filters for Next Generation Sequencing
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Aug 2, 2022 - Python
This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.
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Oct 2, 2022 - Shell
A snakemake pipeline that performs variant calling of Nanopore reads from FastQ files for non-model organisms
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Oct 13, 2022 - Python
Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)
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Nov 8, 2022 - Python
A collection of software to work with genomic variants
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Jan 4, 2023 - Python
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