Convert output from Samtools pileup into a matrix.
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Updated
Nov 2, 2023 - Java
Convert output from Samtools pileup into a matrix.
🌳 Human ancestry inference from genomic data
vue app with flask REST api to process genomic data
WES Analysis scripts for "Immune determinants of response to neoadjuvant chemo-radiation in esophageal adenocarcinoma" publication
Pipeline for gene candidate discovery based on mutagenesis. Featured in gene cloning research published in Nature (DOIs: 10.1038/s41467-020-14937-2, 10.1038/s41467-021-23738-0, 10.1038/s41477-021-00971-5), Molecular Plant (DOI: 10.1016/j.molp.2021.05.010) and New Phytologist (DOI: 10.1111/nph.17075).
Estimates the clonal population structure in a tumour sample given a cell mutation matrix
acorn is an R package that examines various features of de novo variants including subsetting DNVs by individual, variant type, or genomic region; calculating features including variant change counts, lengths, and presence/absence at CpG sites; and characteristics of parental age and number of DNVs.
In this repository I backup the pipelines I write for the project I am involved
Python wrapper and web-server for Ensembl VEP
Cell Line Authentication from ChIP-seq data
This guide outlines a step-by-step process for managing your WordPress plugin to add/update in the WordPress repository using SVN (Subversion). SVN is a version control system that helps you track changes, collaborate with others, and maintain a history of your project.
GATK WGS workflow
Genome assembly and variant benchmarks for Chinese Quartet
An adaptable method for analyzing SNVs, INDELs, and CNVs from Whole Exome Sequencing (WES) data, emphasizing germline variants.
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