Graph-based assembly phasing
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Updated
May 13, 2024 - Python
Graph-based assembly phasing
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
Data intensive science for everyone.
NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
A sequencer for generating Euclidean rhythms. You can download a midi file of your loops.
Official code repository for GATK versions 4 and up
Infectious Disease Sequencing Platform
Structural variant toolkit for VCFs
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
CLI tool for flexible and fast adaptive sampling on ONT sequencers
Automated Pipeline for Variant/Haplotype Calling and Filtering
Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new transcriptome of genome sequence assembly.
This repository summarizes complete NGS analysis for a beginner.
UGENE is free open-source cross-platform bioinformatics software
Mycobacterial pipeline
Simple & Efficient data access for Scala and Scala.js
Unified PHYling pipeline for species tree building from annotated genomes (see https://github.com/stajichlab/AAFTF and https://github.com/nextgenusfs/funannotate for assembly and annotation steps)
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