scrnaseq
Here are 47 public repositories matching this topic...
A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and covariation patterns between interacted cell types.
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May 26, 2024 - Jupyter Notebook
This repository stores the scigenex R library.
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May 23, 2024 - R
a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
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May 6, 2024 - Python
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.
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May 2, 2024 - R
Clustering scRNAseq by genotypes
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Apr 12, 2024 - Python
Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing
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Feb 29, 2024 - Python
A tool to quantify transposable elements expression in scRNA-seq
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Feb 22, 2024 - Python
Discovers nested gene co-expressing modules
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Feb 13, 2024 - R
Cell type pipes for R
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Jan 27, 2024 - R
An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
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Jan 26, 2024 - HTML
Nextflow pipeline for extracting and counting clonal barcodes
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Feb 20, 2024 - Python
R Package for interrogating clonal data
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Nov 14, 2023 - R
Integration analysis with Scanpy and scRNAseq TME from blueprint
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Oct 12, 2023 - Jupyter Notebook
scRNA cluster via Seurat package
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Sep 15, 2023 - R
Explore and share your scRNAseq clustering results
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Sep 6, 2023 - R
Differential expression and allelic analysis, nonparametric statistics
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Aug 26, 2023 - R
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