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  1. scFates scFates Public

    a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.

    Python 45 1

  2. Harmony-GPU Harmony-GPU Public

    Forked from dpeerlab/Harmony

    GPU implementation of Harmony, framework for connecting scRNA-seq data from discrete time points

    Jupyter Notebook

  3. dyntrack dyntrack Public

    DynTrack python package for the study of particle dynamics from 2D tracks

    C++

  4. simpleppt simpleppt Public

    Python implementation of SimplePPT algorithm, with GPU acceleration

    Python 1

  5. glialfates_paper glialfates_paper Public

    Jupyter Notebook 5 1

  6. sgnfates_paper sgnfates_paper Public

    Jupyter Notebook 4 2