A PyMOL Plugin for calculating docking box for LeDock, AutoDock and AutoDock Vina.

PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.

The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..

A Consensus Docking Plugin for PyMOL

PyMOL extension to color AlphaFold structures by confidence (pLDDT).

A PyMOL plugin for visualizing vibrations in molecules and solids

Generate Boltzmann-weighted Sterimol Steric Parameters for Conformationally-Flexible Substituents

A collection of PyMOL plugins to visualize atomic bonds.

calculate chemical bond strength in solids, surfaces and molecules

Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation technique with coordinate-based particles). It can be used on a script layer or as an interactive plugin for PyMol. Features are different selection modes and Optimizers to distribute restraints.

parKVFinder: thread-level parallel KVFinder

parKVFinder-win: thread-level parallel KVFinder for Windows

Docking viewer plug-in for PyMOL

PyMOL plugin to visualize interactions detected by the fingeRNAt program

Pyshifts: A Pymol Plugin for Chemical Shift-Based Analysis of Biomolecular Ensembles

MODE-TASK plugin for PyMOL

Customized batch exhibition of three-dimensional molecules based on pymol framework

A simple script to generate Ramachandran plot from Pymol.

PDB plugin for PyMOL

NRGsuite is a PyMOL plugin (GUI) for FlexAID