National Microbiome Data Collaborative (NMDC) unified data model
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Updated
May 16, 2024 - Python
National Microbiome Data Collaborative (NMDC) unified data model
The SomaDataIO package loads and exports 'SomaScan' data via the 'SomaLogic Operating Co., Inc.' proprietary data file, called an ADAT ('*.adat'). The package also exports auxiliary functions for manipulating, wrangling, and extracting relevant information from an ADAT object once in memory.
A collection of R functions to aid in host-pathogen genomic research
A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
Protegenomics analysis based on Pangenome references
A Python API for the RCSB Protein Data Bank (PDB)
Exon is an OLAP query engine specifically for biology and life science applications.
Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the Olink platform.
Base Classes and Functions for Mass Spectrometry and Proteomics
A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.
A collection of Galaxy-related training material
The codebase of the OpenMS project
Package to study time series (or other series) multi-omics patterns of expresssion with replicates
PDV: an integrative proteomics data viewer
R package for the analysis of Multiplex Substrate Profiling by Mass Spectrometry for Proteases (MSP-MS) Data
Computational biology/bioinformatics workflows, codes, and concept notes on NGS data
🪆🦖 A snakemake wrapper around Nesvilab's FragPipe-CLI. In a perfect world, this pipeline was based on Sage.
R script to perform standard analysis steps for label-free proteomics data
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