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@cambridge-ceu
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jinghuazhao/README.md

Hello, welcome!

I currently work on proteogenomic analysis1, whose generic features are collected for reproducible research.

Footnotes

  1. CASP14-t1091

    The sunflowr figure is from CCTV4 covering Baiyin, Gansu province, China.

    The protein diagram is generated from Jumper, J., et al. (2021). Highly accurate protein structure prediction with AlphaFold. Nature 596(7873): 583-589, https://doi.org/10.1038/s41586-021-03819-2 (Suppl. video 4) with ffmpeg in a module.

    module load ceuadmin/ffmpeg
ffmpeg -i jumper21s4.mp4 -ss 8 -t 8 s4.mp4
ffmpeg -i s4.mp4 -f gif s4.gif
ffprobe s4.gif
ffmpeg -i s4.gif -s 640x360 CASP14-t1091.gif
ffmpeg -i CASP14-t1091.gif -vf "drawtext=fontsize=20:text='CASP14-t1091':fontcolor=red:x=25:y=30" CASP14-t1091-text.gif

    Additional information is available from "Critical Assessment of protein Structure Prediction (CASP)", https://predictioncenter.org/casp14/

    See also Lin, Z., et al. (2023). Evolutionary-scale prediction of atomic-level protein structure with a language model. Science (New York, N.Y.) 379(6637): 1123-1130, https://doi.org/10.1126/science.ade2574. ↩

Pinned

  1. Computational-Statistics Computational-Statistics Public

    Computational Statistics

    4 1

  2. pQTLtools pQTLtools Public

    pQTL tools

    R 16 6

  3. R R Public

    R packages

    HTML 12 4

  4. cambridge-ceu.github.io cambridge-ceu.github.io Public

    https://cambridge-ceu.github.io/

    JavaScript 1

  5. cambridge-ceu/csd3 cambridge-ceu/csd3 Public

    CSD3

    Jupyter Notebook

  6. cambridge-ceu/GitHub-matters cambridge-ceu/GitHub-matters Public

    GitHub informaiton