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Mar 21, 2019 - Python
protein-protein-interaction-network
Here are 16 public repositories matching this topic...
Implements the MAGNN algorithm to predict concentration change sign for metabolites using protein-protein-metabolite interaction (PPMI) networks
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Jul 22, 2021 - Jupyter Notebook
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Aug 22, 2021 - Python
Interactive visualizations for protein complexes from hu.MAP 1.0 and hu.MAP 2.0 with RL
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Jun 22, 2022 - HTML
Identification of heterogeneous biomarkers for breast cancer using Clustering and PageRank algorithms (bioinformatics)
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Jun 27, 2022 - Python
Interactive visualizations for protein complexes from hu.MAP 1.0 and hu.MAP 2.0 by Super.Complex and CORUM
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Jul 3, 2022 - HTML
Reinforcement learning community detection method using known communities
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Aug 3, 2022 - Python
Protein Interaction Network Reconstruction with a Structural Gated Attention Deep Model by Incorporating Network Structure Information
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Aug 25, 2022 - Python
Parameter advising for biological pathway creation algorithms
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Sep 7, 2022 - Python
Code for publication: Hypergraph Geometry Reflects Higher-Order Dynamics in Protein Interaction Networks; Kevin A. Murgas, Emil Saucan, Romeil Sandhu; Scientific Reports (2022)
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Oct 8, 2022 - MATLAB
The work focuses on assessing the host-pathogen 21 protein interaction affinity of the coronavirus family, having 44 different variants. In light of these 22 considerations, a GO-semantic scoring function is provided based on Gene Ontology (GO) graphs 23 for determining the binding affinity of any two proteins at the organism level.
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Feb 17, 2023
Multi-omics differential expression and integration using PPI networks
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Mar 3, 2023 - R
data integration and network analysis of post-translational modification based on mass spectrometry data
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Apr 17, 2023 - Python
Reproducibility repo for Shashikadze et al. "Maternal hyperglycemia induces alterations in hepatic amino acid, glucose and lipid metabolism of neonatal offspring: Multi-omics insights from a diabetic pig model".
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Jun 9, 2023 - Markdown
Embeddings to Network Alignment - align biological networks between two species
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Sep 8, 2023 - Python
GitHub Repository associated with the piQTL project (Mapping effects of genome-wide genetic variation to protein-protein interactions reveals molecular mechanisms of complex traits) [ Serohijos & Michnick Lab, Université de Montréal ]
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Mar 18, 2024 - Jupyter Notebook
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