Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format
-
Updated
Oct 15, 2010 - C++
Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format
This repo is deprecated. Use https://github.com/plantarum/flowPloidy instead!
Preliminary mapping and SDM
🌺 Short pipeline for counting number of clusters across .sam files
Automated processing and haplotype inference for double-barcoded PCR amplicons
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
Method for rescuing collapsed contigs.
This repository hosts codes and analytic procedures for the article "The recombination landscape and multiple QTL mapping in a Solanum tuberosum cv. ‘Atlantic’-derived F1 population" by Pereira et al. (2020)
This repository serves to document, share, and collaborate on scripts used in the University of Arkansas fruit breeding lab.
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Ploidy agnostic phasing pipeline and algorithm
Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids
R package for random-effect multiple QTL mapping in autopolyploids
Add a description, image, and links to the polyploid topic page so that developers can more easily learn about it.
To associate your repository with the polyploid topic, visit your repo's landing page and select "manage topics."