pcr
Here are 122 public repositories matching this topic...
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
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May 13, 2024 - Python
A lightweight Python package to perform in silico PCR
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May 1, 2024 - Python
Machine Learning for COVID-19 Data Analysis Project
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Apr 26, 2024 - Python
This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
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Apr 24, 2024
The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacterial species in complex ecosystems.
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Apr 24, 2024 - Python
A PCR primer tool for DNA assembly flows
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Apr 24, 2024 - Python
Wetlab Calculator
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Apr 18, 2024
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
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Apr 3, 2024 - Python
multiPrime is a mismatch-tolerant minimal primer set design tool for large and diverse sequences (e.g. Virus). Here is a web-based version (test: http://multiPrime.cn))
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Apr 1, 2024 - Python
Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
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Mar 31, 2024 - C++
This project explores interpretable machine learning models using Decision Trees for classification and LASSO, Ridge Regression, PCR, and Boosting techniques for regression, applied to Acute Inflammations and Communities and Crime datasets, focusing on model interpretability, feature analysis, and optimization.
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Feb 29, 2024 - Jupyter Notebook
Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing library they are read from. It is intended to differentiate between ARTIC v3, ARTIC v4, ARTIC v4.1, VarSkip 1a, VarSkip 2, Midnight and VarSkip Long primer sets sequenced by Illumina or ONT.
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Feb 27, 2024 - Rust
Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
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Feb 20, 2024 - R
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