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Oct 4, 2021 - Jupyter Notebook
pathway-analysis
Here are 92 public repositories matching this topic...
BioJS component for PCViz
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Sep 13, 2015 - JavaScript
A wrapper around Bio2BEL HGNC for ComPath
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Jun 7, 2018 - Python
Investigating the use of hierarchical modelling for pathway analyses
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Dec 14, 2018 - R
CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)
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Nov 8, 2021 - Python
Neuronal genes mutation interactions and analysis
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Aug 17, 2021 - Jupyter Notebook
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May 15, 2018 - Python
This repository contains the code for the project: Transcriptomic meta-analysis reveals up-regulation of gene expression functional in osteoclast differentiation in human septic shock
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Aug 27, 2020 - R
Implementing the Linkage and Pathway Universal Tests using the clrdag package for Direceted Acyclic Graphs. Testing the two tests on cytometry data to analyze the links.
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Dec 10, 2022 - HTML
Survival based clustering of gene expression data for disease subtyping
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Apr 1, 2023 - R
An example on how to use reactome Rest API
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Dec 4, 2017 - Jupyter Notebook
Snakemake pipeline to benchmark 11 functional pathway annotation systems
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Jun 30, 2022 - Python
Colorectal cancer CMSs subtyping and personalized medication recommendation based on RNA seq pathway analysis
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Jun 8, 2022 - Jupyter Notebook
KNIME nodes for WikiPathways.
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Mar 21, 2018 - Java
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Jun 29, 2021 - HTML
A github repo for the BioHackathon Europe 2020 "An interface between Galaxy and disease/pathway maps"
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Jan 9, 2024 - JavaScript
This repository hosts the java implementation of MITHrIL and SPECIFIC
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Dec 7, 2020 - Java
An R package for multi-dimensional pathway enrichment analysis (legacy repo)
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Oct 6, 2019 - R
Analyze and compare different pathway resources
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Jul 17, 2018 - R
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