Evaluation framework for oncology foundation models (FMs)

Using a Deep Learning CNN to detect acute lymphoblastic leukemia (ALL) from blood microscopy

VMAT modulation complexity index calculator based on https://github.com/victorgabr/ApertureComplexity

Point of care system for AMPATH clinics

Clonal reconstruction from HTS data

Personalized Network-based Anti-Cancer Therapy Appointment

Crossmapped phenotype ontologies for the oncology domain

Clinical oncology tumor board decision support system made by the Decider project.

Code from my work as Radiation Physicist Assistant at Cookeville Regional Medical Center

Notes and procedures that I wrote as Radiation Physicist Assistant at Cookeville Regional Medical Center

A project focused on using single-cell RNA sequencing data (scRNA-seq) and pseudo time to improve colon cancer diagnosis and outcomes.

Repository for code related to the CDGnet tool for prioritizing targeted cancer therapies

The Variantstore is a Java/Groovy-based service application implemented using the Micronaut framework and enables storage and access to information on genomic variants and metadata from a connected database via a RESTful API.

R Package that extracts chemotherapy regimens from drug exposures in the OMOP CDM

Identification of novel lncRNAs in non-small cell lung cancer. RNA-sequencing course (467713), University of Bern

diCOMBINE is a homemade 3D DICOM visualization and lesion segmentation tool to allow users to review 3d DICOM images of hundreds of patients and label the lesion centers

The decider R package: decision making in multiple-arm oncology dose escalation trials with logistic regression

Denoising Diffusion Medical Model (DDMM) on PyTorch for generating datasets of Acute Lymphoblastic Leukemia 🩺💜

Spreadsheets from my work as Radiation Physicist Assistant at Cookeville Regional Medical Center

A React web application for checking the mCODE coverage of a FHIR Patient Bundle