sra cloner and interacts with the nucleotide sra and allows for multiple sra fetcher
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Updated
May 24, 2024 - Shell
sra cloner and interacts with the nucleotide sra and allows for multiple sra fetcher
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
A tool to prepare files and run/monitor programmatic submissions to NCBI
Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
This Python script retrieve all children organism under an ancestor in NCBI taxonomy.
Package for fetching metadata and downloading data from SRA/ENA/GEO
frequency of high level ranks in sequence databases
fast utils for fetch and dump NCBI SRA archive raw data
Data and code used in the Plant Genomes dashboard
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
Pulls Metadata from NCBI based on Sample name or SRR #
Extract metadata from biosamples in NCBI
A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly
The Docker integration for the r2g project.
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
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