A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
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Updated
Mar 30, 2020 - Python
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
The Docker integration for the r2g project.
A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly
Extract metadata from biosamples in NCBI
Pulls Metadata from NCBI based on Sample name or SRR #
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
Data and code used in the Plant Genomes dashboard
fast utils for fetch and dump NCBI SRA archive raw data
frequency of high level ranks in sequence databases
Package for fetching metadata and downloading data from SRA/ENA/GEO
This Python script retrieve all children organism under an ancestor in NCBI taxonomy.
Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
A tool to prepare files and run/monitor programmatic submissions to NCBI
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
sra cloner and interacts with the nucleotide sra and allows for multiple sra fetcher
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