Genome Metadata Visualizer is a series of scripts written to process and visualise genome metadata after it is pulled from NCBI using the dataset and dataformat command line tools.
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Updated
Apr 18, 2024 - HTML
Genome Metadata Visualizer is a series of scripts written to process and visualise genome metadata after it is pulled from NCBI using the dataset and dataformat command line tools.
This Python script retrieve all children organism under an ancestor in NCBI taxonomy.
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
A tool to fetch Protein sequences of different subtypes of Influenza A virus from the NCBI database and create a local database to store the sequences for further library preparation used for Phage-Immunoprecipitation Sequencing.
Assign taxonomy with blast, can be used for qiime
Julia package to handle the NCBI Taxonomy database.
Find and retrieve biological data and its metadata from NCBI
Pull Sequence Read Archive (SRA) data into AnVIL
How to download genomes using the accession number
Bio Python Project using getopt library in python and engaging with the command line prompt.
Identifying viruses as an anomaly
Deep learning methods for feature selection in gene expression autism data.
Django app for generating frequency portraits of gene sequences
NCBI Datasets is an experimental resource for finding and building datasets
Analysis of the viral genomes of SARS-CoV2 using MAFFT and igtree
A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.
🌱 ➡️ 🌳 Add new taxa or taxonomic groups to the NCBI Taxdump files
An R code to convert NCBI data files into CSV
Microarray Analysis Pipeline in Python
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