Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
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Updated
May 16, 2024 - Python
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
Matlab routines for online non-rigid motion correction of calcium imaging data
Compressed Sensing and Motion Correction LAB: An MR acquisition and reconstruction system
CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).
FALCON is a Python-based software application designed to facilitate PET motion correction, both for head and total-body scans. Our program is built around the fast 'greedy' registration toolkit, which serves as the registration engine. With FALCON, users can enjoy a streamlined experience for implementing motion correction.
Free-breathing myocardial T1 mapping with Physically-Constrained Motion Correction
A table containing imaging analysis tools for biology, with a focus on calcium imaging.
A U-Net based end-to-end MRI motion correction. With/Without GAN version is available.
Flow-Registration toolbox for 2P motion compensation
PKGBUILD of CaImAn for Archlinux
Quantitative MRI toolbox in Python
An Electron app to register medical images using BROCCOLI
Figures for MERLIN paper and demo of pymerlin
vNav motion correction reduces variation in morphometric measures of structures implicated in neurodegenerative disease
Server running on AWS (EC2 instance): ANTs Motion Correction template module implemented on Mercure DICOM server
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