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Achievements

Achievement: Pull SharkAchievement: Arctic Code Vault Contributor
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emilljungberg/README.md

Overview of projects

MRI motion correction with MERLIN (python)

The MERLIN motion correction method, published in MRM in 2022 (link below), achieves motion correction using self navigation in 3D radial MRI. The method was developed using 3D radial ZTE. The source code used in the original paper is found in the pymerlin repository. Code to reproduce the figures in the papers are found in merlin_mrm repository.

From the paper Ljungberg E,et al. Motion corrected silent ZTE neuroimaging. Magnetic Resonance in Med. 2022 Jul;88(1):195–210

Data curation for Lund 7T MRI

7T_BIDS_organiser is a framework for organising MRI data from the 7T system in Lund according to the BIDS format.

mcDESPOT simulation GUI (matlab)

The mcdespot_gui_simulation repository contains MATLAB code for simulating the signal respons using the mcDESPOT method for T1 and T2 mapping.

Pinned

  1. pyMERLIN pyMERLIN Public

    Python tools for MERLIN

    Python 6

  2. merlin_mrm merlin_mrm Public

    Figures for MERLIN paper and demo of pymerlin

    Jupyter Notebook 2

  3. quit_docker quit_docker Public

    Docker container for running Quantitaive Imaging Tools (QUIT)

    Dockerfile