Skip to content

Issues: Kinggerm/GetOrganelle

How to quickly pick the path(s), when multiple circular genom...
#86 opened May 23, 2021 by Kinggerm
Open
Bowtie2 not found
#102 by ardy20 was closed Oct 14, 2021
Closed 2
Spades finished abnormally, err code: -11
#83 by piwczynski was closed Apr 10, 2022
Closed 12
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

48 Open 187 Closed
48 Open 187 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

TypeError: can't convert complex to int.
#333 opened May 27, 2024 by allen-zhan340
1 task
1
Increase the insert size length to improve assembly completeness
#329 opened May 2, 2024 by zhengyanstu
2 of 3 tasks
1
Regarding the Use of Incomplete Plant Mitochondrial Genome Assembly Outputs for Subsequent Analysis
#317 opened Mar 14, 2024 by twdawd
2
Estimated XX base-coverage = 0.00 bug
#311 opened Feb 6, 2024 by MarjaHei
5
Slimming failed and no valid assembly graph found
#301 opened Dec 6, 2023 by poojancf
6
Discrepancy between get_organelle_from_reads and summary_get_organelle_output logs
#279 opened Jun 20, 2023 by marcelglueck
3 tasks done
1
Problems with canu-produced gfa processing
#265 opened May 10, 2023 by Hoberti
1
ERROR: Assembling failed due to SPAdes failure
#251 opened Mar 26, 2023 by njbayonav
4
Using the GFA file (p_utg) exported by hifiasm for assembly with the error "Slimming failed."
#246 opened Mar 17, 2023 by sunjinkkk
9
Error with OS return value: 22; Can anyone please help me with a solution ?
#245 opened Mar 15, 2023 by avvypaks
5
error using different seed
#235 opened Feb 9, 2023 by ilenia6
1
Error assembling the Arabidopsis test dataset (SPAdes errors)
#226 opened Jan 6, 2023 by jsmillergh
6
Multiple variants with structural variations; 'Consensus made' keeps repeating
#223 opened Dec 20, 2022 by SethMusker
2
ERROR: Error with running SPAdes: == Error == system call for: finished abnormally, OS return value: 21
#221 opened Dec 19, 2022 by VaninaTonzo
1
Incompatible glibc on conda install
#216 opened Nov 29, 2022 by McAllister-NOAA
4
Mistake in choosing parallele contigs from embplant_pt-embplant_mt.fastg: mt vs pt
#215 opened Nov 24, 2022 by 365gemini
5
zsh: killed
#214 opened Nov 23, 2022 by ericgmoreno
1
Feature request- multiple paired read file input
#213 opened Nov 17, 2022 by rotifergirl
1
The program was killed in the process of extracting reads
#212 opened Nov 3, 2022 by wbc569668815
2
ERROR: Blast is not available!
#208 opened Oct 29, 2022 by wbyu
4
SPAdes error class: PermissionError
#203 opened Oct 11, 2022 by NowickiLab
1
Error with Database
#199 opened Oct 6, 2022 by onkarnath89
4
Assembling exited halfway - ERROR: No valid assembly graph found
#198 opened Sep 29, 2022 by JianjunJin
7
issues with mitogenome assembly
#187 opened Aug 13, 2022 by lew213
Get multiple graphs (GFA files) with different lengths due to similar depth between mitogenome and plastome
#185 opened Aug 9, 2022 by nigisensei
5
ProTip! What’s not been updated in a month: updated:<2024-05-03.