Constellab brick for microbiome data analysic
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Updated
May 23, 2024 - Python
Constellab brick for microbiome data analysic
Python package to study microbial communities using metabolic modeling.
An ensemble of functions for easier and quicker preliminary microbiome analyses
Papers in which I have been involved as data scientist. For the title, info and and/or the DOI of each one of them, check the corrispective "Paper_title_and_info" txt file
R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
Make Picrust2 Output Analysis and Visualization Easier
Accurate sample inference from amplicon data with single nucleotide resolution
RiboTaxa: combined approaches for rRNA genes taxonomic resolution down to the species level from metagenomics data revealing novelties.
A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.
ECCMID 2024 Abstract #04375. Code used to perform the analysis and figures.
This repository provides scripts for the 16S microbiome analysis and metagenome prediction using linux and R-Studio
biomeUtils is Module-01 of the RIVM-ToolBox. R pkg with common utilities for microbiome research done at the RIVM.
Repository for pipelines and scripts to analyse microbiota
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
Amplicon sequencing data analysis of skin microbiota in the black olm subspecies using Qiime2
Repository with scripts and data generated during my internship at Institut Pasteur of Paris
Improved bee microbiota characterization using routine 16S rRNA gene sequencing 🐝🧬
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