Tutorial for MicrobiomeAnalysis R package

Scripts and data for the METAolive project

R scripts used for analysis of data reported in Comparison of Small Gut and Whole Gut Microbiota of First-Degree Relatives with Adult Patients with Celiac Disease and Controls

biomeUtils is Module-01 of the RIVM-ToolBox. R pkg with common utilities for microbiome research done at the RIVM.

ECCMID 2024 Abstract #04375. Code used to perform the analysis and figures.

Calculate Peak-to-Trough Ratio (PTR), plot coverage graph, and perform quality control over contigs in a single pipeline integrating Glimmer3, Bowtie2, Sickle, and algorithms in R.

Data and analysis code for the Indian gut microbiota study

Repository for pipelines and scripts to analyse microbiota

Amplicon sequencing data analysis of skin microbiota in the black olm subspecies using Qiime2

RiboTaxa: combined approaches for rRNA genes taxonomic resolution down to the species level from metagenomics data revealing novelties.

A summary of the scripts used in performing quality filtering and data analysis of Illumina high throughout bacterial sequences involved in this freshwater aquatic invertebrate microbiota study.

The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures

An ensemble of functions for easier and quicker preliminary microbiome analyses

Microbiome Study of Lupus Patients

Repository for 16S paper

This repo models the temporal dynamics of the cervicovaginal microbiome to identify targets that promote reproductive health

Package Containing Utility-functions to Work with Microbiota-data.

Accurate sample inference from amplicon data with single nucleotide resolution

Association Between Gut Microbiota and Hypertension

Les études de métagénomiques mettent en évidence la présence et l'absence de différentes souches dans un microbiome. Pour résumer les abondances, on peut établir des graphes de co-occurence via : Rapid inference of direct interactions in large-scale ecological networks from heterogeneous microbial sequencing data, Janko Tackmann, Joao Frederico …