Arche: a functional-optimized annotator for microbial meta(genomes)
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Updated
Dec 13, 2023 - Shell
Arche: a functional-optimized annotator for microbial meta(genomes)
XGBoost implementation for bacteria family identification
HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes
CWL implementation for DEMIC
To reproduce some results from "CAMISIM: simulating metagenomes and microbial communities". Authors: Simon Konnov, Ciara Makievskaya, Ruslan Gumerov
This project aims do describe and explore the metagenomes of fern species of the genus Azolla.
bacterial metagenomes and pangenome graphs from both illumina and long reads
Code associated with the Ley Lab animal gut metagenome assembly project
MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.
Application of Recurrent Neural Network to Metagenomic
A few scripts to help with the installation of MetaErg, the contig/bin annotation pipeline
FOCUS: An Agile Profiler for Metagenomic Data
Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination
MetaCarvel: A scaffolder for metagenomes
Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
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