Chemical reaction balancing web service
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Updated
Sep 13, 2017 - Python
Chemical reaction balancing web service
MNXref: Reconciliation of metabolites and biochemical reactions for metabolic networks
A manually curated database of human gut metabolic modules.
A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
Genome-scale metabolic model of Methylococcus capsulatus.
Tool for the reconstruction of context-specific metabolic models based on omics data from several sources
Utility to simplify obtaining information from genome-scale models as well as their manipulation. This implementation is available only for working with COBRApy.
Genome-scale metabolic model of Rhodotorula toruloides
Enzymatic Link Prediction
A RMosek optimization interface for the Sybil package
Diversity-based enumeration of optimal context-specific metabolic networks
Genome-scale model of Yarrowia lipolytica.
Metabolic pathway inference using non-negative matrix factorization with community detection
CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)
Software developed and main results obtained in the Master dissertation: A model validation pipeline for healthy tissue genome-scale metabolic models. Dissertation link to be added.
epigenome scale metabolic modeling for cancer metabolism
A pathologic file generator (PLFG) is implemented to assist and facilitate the curation progress of every computationally predicted pathway genome database (PGDB).
An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles
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