COBRA utils

This is a series of utilities to use together with COBRApy. The goal of this tool is to make easier the usage of COBRApy.

Installation

To install this package from a Unix OS, run:

pip install cobra-utils

To install this package from Windows, run:

python -m pip install cobra-utils

In case you downloaded the source code, in a Unix OS run:

pip install -e .

or in Windows:

python -m pip install -e .

Examples

• Loading a model and retrieving reactions information
• Reporter metabolites and pathways from differential expression in two strains of E. coli