Accurate sample inference from amplicon data with single nucleotide resolution
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Updated
Jan 23, 2024 - R
Accurate sample inference from amplicon data with single nucleotide resolution
Versatile open-source tool for microbiome analysis
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
A robust and fast clustering method for amplicon-based studies
R mased batch sequence downloader, with primer development and in silico evaluation capabilities
Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees
This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi: https://doi.org/10.1101/353904
Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
Dadaist2 🟨 Highway to R
Environmental DNA metabarcoding taxonomic identification
A python package to query different databases of boldsystems.org
This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequences.
Course material for the Action Nationale de Formation (ANF): Exploration de la diversité taxonomique des écosystèmes par metabarcoding
A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxa to identify (and remove) are Homo and Homo sapiens. Removal is optional.
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