kmer
Here are 71 public repositories matching this topic...
A C and Python implementation of latent strain analysis for eigengenome partitioning.
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Mar 11, 2017 - C
Counts k-kmers and sorts top "k" kmer by occurrence.
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Mar 16, 2017 - C++
Repo for Computational Systems Biology and Functional Genomics @ University of Maryland, College Park
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Nov 18, 2017 - HTML
A practical on genome assembly proposed during the 2019 ICME
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Sep 4, 2018
Count canonical kmers with Malte Skarupke's bytell_hash_map hash table
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Nov 3, 2018 - C++
Count canonical kmers with Google sparse_hash_map
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Nov 3, 2018 - C++
Count canonical kmers with Emil Ernerfeldt's emilib::HashMap
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Nov 4, 2018 - C++
Count canonical kmers with STL unordered_map
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Nov 4, 2018 - C++
Count canonical kmers with Abseil C++ `absl::flat_hash_map`
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Nov 11, 2018 - C++
Count canonical kmers with Boost C++ `boost::unordered_map` hash table
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Nov 11, 2018 - C++
A Streaming Algorithm for Estimating k-mer Counts with Optimal Space Usage in Parallel
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Jan 20, 2019 - C++
De novo genome assembly and multisample variant calling
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Mar 28, 2019 - C
Implementation of some (multiple) instance kernels
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May 30, 2019 - Python
This is our implementation for D2 distance algorithm for k-mers.
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Jul 31, 2019 - Java
Repo for code and data related to project developing methodology for applying Harmonic Mean P-Values to sliding windows of multiple aligned genomes.
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Oct 16, 2019 - Python
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