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68 followers · 56 following
  • Altius Institute for Biomedical Sciences
  • Seattle, WA USA

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Achievements

Achievement: QuickdrawAchievement: Arctic Code Vault ContributorAchievement: StarstruckAchievement: Pull Sharkx2
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alexpreynolds/README.md

Hello!

I work in the Meuleman lab at the Altius Institute to help simplify and enhance analysis of, presentation of, and interaction with complex and large-scale datasets. The following repositories are tools and code snippets I've made or contributed to, along the way. Share and enjoy!

Pinned

  1. bedops/bedops bedops/bedops Public

    🔬 BEDOPS: high-performance genomic feature operations

    C 291 59

  2. sample sample Public

    Performs memory-efficient reservoir sampling on very large input files delimited by newlines

    C 68 12

  3. byte-store byte-store Public

    Generate and explore upper triangular and square matrices of 1-byte values

    C 2 2

  4. soda soda Public

    Python-based UCSC genome browser snapshot-taker and gallery-maker

    JavaScript 12 3

  5. kmer-collapse kmer-collapse Public

    Collapse a set of redundant kmers to use IUPAC degenerate bases

    Python 3

  6. filter-regions filter-regions Public

    Filter genomic regions by score and proximity

    Python 1