Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
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Updated
Jun 4, 2024 - Rust
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
The Flexible Epidemic Modeling Pipeline
Website for the Flexible Epidemic Modeling Pipeline
Gene and Primer Sequence Analysis for SARS-CoV-2, EGFR(Non Small Lung Cancer Cell), Influenza DNAs ### How can I check my Oligo primers to ensure there are no significant primer design issues? - The difference between melting temperatures (Tm) of the primers should be less than 5°C. - The GC content should be between 35-80% or equivalent to the …
NGS pipeline for influenza virus libraries
Pipeline for analyses of multiple pathogens, like SARS-CoV-2 with positivity rate analyses
vSNP -- validate SNPs
Workflows and scripts for the assembly and analysis of influenza whole genome amplicon sequencing.
Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution
linfluencer degrees
MPH Capstone Data Management & Analysis
DeepAR implementation for seasonal influenza cases in German districts
Influenza A Full-Length Consensus Calling for Nanopore Sequencing Data
Code to accompany "Use of Patient-Reported Symptom Data in Clinical Decision Rules for Predicting Influenza in a Telemedicine Setting" by Billings et al, JABFM 2023
Heatmap showing the number of deaths month to month since the beginning of the pandemic.
Prediction infectious strains of Influenza A virus for human
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