Data logistics system enabling real-time pathogen surveillance. Built for the Seattle Flu Study.

用R语言解读传染病传播模型

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

tsiR: An R package for time-series Susceptible-Infected-Recovered models of epidemics

Detecção de COVID-19 a partir de imagens de raios X de tórax utilizando uma Deep Convolutional Neural Network otimizada.

Multi-layer network agent-based model of the progression of the sars-cov-2 infection and smartphone-based contact tracing

This is the DataHarmonizer spreadsheet web application bundled with pathogen genomics data entry and validation templates

A python3 library for building best practice fungal genomic analysis pipeline

Chécoin is a decentralized cryptocurrency that is based on the proof-of-stake algorithms to guarantee supreme security for keeping record of Covid-19 testers, other infectious diseases and their test results. An extraordinary cryptocurrency, which was designed to work with the sporting communities, sporting fans and other large groups to ensure …

Modelling Tuberculosis, including BCG vaccination, in England

Now-casting Japan during the COVID-2019 Pandemic at the beginning of March 2020

An optimised implementation of the tau statistic (relative prevalence ratio form), originally from R's IDSpatialStats package.

This geospatial project maps Marburg virus transmission, a zoonotic disease with high case fatality rates in Africa. It highlights the need for medical treatment, isolation, and quarantine measures. Vaccines and contact tracing can limit the global spread of epidemics

Code to accompany "Use of Patient-Reported Symptom Data in Clinical Decision Rules for Predicting Influenza in a Telemedicine Setting" by Billings et al, JABFM 2023

Documents for things infectious disease and Japan.

Applied a probabilistic machine learning approach to melt curve-based DNA profiling to enable novel genotype detection

Code accompying an upcoming publication on the development of a pneumococcal LAMP assay.

Code for an upcoming paper on pneumococcal PCR-based diagnostics.