Series of scripts to analyse 454 and Illumina sequences in SSU amplicon against MaarjAM database
-
Updated
Mar 15, 2020 - Python
Series of scripts to analyse 454 and Illumina sequences in SSU amplicon against MaarjAM database
Updated Reference Genome Sequence and Annotation of Mycobacterium bovis AF2122/97
Copy Number Variant Analyzer for Illumina Dragen files. Work in Progress...
ABBA-BABA test conducted on Saccharomyces cerevisiae strains using whole-genome alignment.
Discover VNTR-associated DELs that are hard to find using Illumina reads
Illumina pipeline for 16S sequencing, completed in Python.
Create fastq symlinks for selected samples in sequencer output directories based on several criteria
📦 Interleave and deinterleave FASTQ files. Streams and gzipped FASTQ files are accepted.
A Github action for building Snapcraft projects
Group B Strep pipelines for large dataset gene analysis from Illumina sequencing.
Accompanying information to a scientific publication on the assembly of bacterial genomes using Illumina and nanopore sequencing data using Unicylcer.
Detection of Saccharomyces paradoxus DNA across Saccharomyces cerevisiae, and vice versa.
A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.
Scripts supporting the manuscript submitted to the Molecular Ecology Resources Special Issue 'Omics for species conservation'
RNA-Seq Pipeline for processing paired-end FASTQ transcripts generated from Illumina sequencing. The pipeline trims adapter sequences, aligns transcripts to a specified region of interest on the reference genome, and facilitates downstream analysis.
Parse Illumina InterOp folder
Illumina (and SOLiD) sensitive read mapping tool (cloned from svn://scm.gforge.inria.fr/svnroot/storm/)
IMOM - A pipeline for interacting with, processing, and analyzing multi-OM datasets in phylogenetic and evolutionary context
code getter for illumina, pacbio, oxford long reads alignments.
LpSIM is a virtual platform for simulating the different stages of the Illumina sequencing library preparation workflow and the possible artefacts that may be introduced at each stage.
Add a description, image, and links to the illumina-sequencing topic page so that developers can more easily learn about it.
To associate your repository with the illumina-sequencing topic, visit your repo's landing page and select "manage topics."