A Python package for Biopython that gives feature annotations from GenBank records a new and better life
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Updated
Apr 27, 2016 - Python
A Python package for Biopython that gives feature annotations from GenBank records a new and better life
Tools for importing GFF files to a Neo4J graph database
Toolkit for handling genome annotations in various formats. Python3.
Scripts to index and align Bovine genome with HISAT2
Extracts information from GFF and prepare them in bed format
Convert sequence IDs between ucsc/refseq/genbank
A web UI for the fungal version of antiSMASH.
Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)
Genome annotation data analysis and management implemented in pure Python
read VCF and select synonymous or non-synonymous coding variants
EMBLish aims to provide a tool for converting gene prediction files such as Maker output file and gene annotation files such as Pannzer2 output file into the EMBL format
The AgBioData GFF3 working group has developed recommendations to solve common problems in the GFF3 format. We suggest improvements for each of the GFF3 fields, as well as the special cases of modeling functional annotations, and standard protein-coding genes. We welcome discussion of these recommendations from the larger community.
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