Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)
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Updated
Sep 12, 2019 - Perl
Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)
Toolkit for handling genome annotations in various formats. Python3.
Extracts information from GFF and prepare them in bed format
final project of the advanced programming classes, course of Genomics bachelor degree - UniBo.
This tool will convert GFF3 files into DDBJ annotation files. It was created to work with Braker2 generated GFF files, but should work with any other GFF3 file as well.
A web UI for the fungal version of antiSMASH.
EMBLish aims to provide a tool for converting gene prediction files such as Maker output file and gene annotation files such as Pannzer2 output file into the EMBL format
💻 Interconverting FASTA, GFF, and CSV.
A tool to aggregate and load TB data to Neo4j
Converts the string output of BPROM, a promoter prediction software tool, to the GFF3 file format. Used in a CPT Galaxy phage genomics workflow
Scripts to index and align Bovine genome with HISAT2
read VCF and select synonymous or non-synonymous coding variants
Tools for importing GFF files to a Neo4J graph database
C# web tool for reading GFF3 files, filtering, ordering, extracting information into Excel, GFF3 files, CDS files, and comparing GFF3 data with FASTA and CDS files.
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