🔎 💊 Mass screening of contigs for antimicrobial and virulence genes
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Updated
Dec 31, 2023 - Perl
🔎 💊 Mass screening of contigs for antimicrobial and virulence genes
Phigaro is a scalable command-line tool for predicting phages and prophages
ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnrich provide functions to import any in-house catalogue, automate and plot the enrichment analysis for genomic regions.
Makefile for reference annotations for genes & genomic regions
An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests
The GSuite HyperBrowser - the new version of the Genomic HyperBrowser, currently forked from Galaxy v16.01
Bedfile perturbation tool
Filter fastq file based on bed regions
Thesaurus for genetic variants
BedSect web server source code repository.
Very fast and efficient detection of multiple overlaps between genomic regions. For details on the algorithm and the implementation, please refer to the following publication: Aszódi, A. (2012): MULTOVL: Fast multiple overlaps of genomic regions. Bioinformatics 28: 3318-3319.
C++ library for genomic region based storage and querying
Repozitorijoje saugomi failai, implementuojantys R Shiny aplikaciją ir leidžiantys vertinti įkeltų genominių duomenų kokybę bei vykdyti biologines analizes.
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.
A Snakemake workflow for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.
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