The generic genome-scale metabolic model of Homo sapiens
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Updated
May 9, 2024 - MATLAB
The generic genome-scale metabolic model of Homo sapiens
The consensus GEM for Saccharomyces cerevisiae
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models
GEM for the microalga Microchloropsis gaditana.
CBMPy Metadraft: a flexible and extensible genome-scale model reconstruction tool
Genome scale metabolic model for Ogataea polymorpha NCYC495.
COMMIT: Community-dependent gap-filling considering metabolite leakage
Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
Programming interface to resource allocation modelling with the Resource Balance Analysis (RBA) method. This is version 1.0.3
Designing microbial communities
Common biochemical and topological attributes of metabolic genes recurrently dysregulated in tumors.
TRIMER is a package for building integrated metabolic–regulatory models base on Bayesian network. TRIMER can be used for knockout phenotype prediction and knock flux prediction.
A container for all enzyme constrained models created by GECKO.
A metabolic modeling workflow for communities of organisms in an nasal medium.
IgemRNA is an open access toolbox for transcriptome data statistical and biochemical network topology-based analysis. IgemRNA was developed in the MATLAB environment in order to take advantage of the up-to-date and most commonly distributed GSM modelling tool Cobra Toolbox 3.0 and spreadsheet file capabilities.
Learn metabolic modelling and using ScrumPy for modelling.
Methanoperedens nitroreducens genome-scale metabolic model.
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