Discussions

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  some metabolicTasks_Essential Fail when running prepHumanModelForftINIT

  yasamantaebi started Mar 6, 2024 in General

  

  

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  Are these genes mismatched in Human-GEM 1.18.0 version?

  Jade-Jung started Feb 19, 2024 in General

  

  

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  Using ftINIT with batch-corrected scRNA-seq data

  kota-2000 asked Dec 1, 2023 in Q&A · Unanswered

  

  

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  The universality of metabolic tasks list

  bug

  yangjingyu1108 asked Nov 21, 2023 in Q&A · Answered

  

  

  

  

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  Guidelines and Principles for PR review

  mihai-sysbio started Nov 14, 2023 in Ideas

  

  

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  Building models using tINIT on microarray data

  manas-kohli asked Nov 1, 2023 in Q&A · Unanswered

  

  

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  CPM normalization on pooled bootstrapped scRNA-seq data

  Jade-Jung asked Oct 12, 2023 in Q&A · Answered

  

  

  

  

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  Adding artificial sink reactions

  manas-kohli asked Aug 22, 2023 in Q&A · Answered

  

  

  

  

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  Error in ftINIT (Failed to find good enough solution within the time frame. MIPGap: Inf)

  wontfix

  hazelweeling asked Apr 17, 2023 in Q&A · Unanswered

  

  

  

  

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  prepHumanModelForftINIT issue when working with MouseGEM

  rsango6 asked Aug 14, 2023 in Q&A · Answered

  

  

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  Accurate and complete representation of mitochondrial intermembrane compartment [i]

  haowang-bioinfo started Aug 13, 2023 in Ideas

  

  

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  Reaction confidence scores

  wshao1 asked Aug 8, 2023 in Q&A · Answered

  

  

  

  

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  Python script to check metabolic tasks

  raquelgg11 started Jul 19, 2023 in General

  

  

  

  

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  feat: include an essentiality summary for each release

  haowang-bioinfo started May 28, 2022 in Ideas · Closed

  

  

  

  

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  can't generate ATP in tutorial

  bilalmoiz93 asked Jul 31, 2023 in Q&A · Unanswered

  

  

  

  

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  How to better document deprecated met/rxn ids

  haowang-bioinfo started Jun 7, 2023 in Ideas

  

  

  

  

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  add gene name to Human-GEM

  haowang-bioinfo started Apr 21, 2023 in Ideas · Closed

  

  

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  Measuring production rates of metabolites using FBA

  manas-kohli asked May 23, 2023 in Q&A · Unanswered

  

  

  

  

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  Error in ftINIT code: undefined function "isnan" for input arguments of type 'cell'.

  Dhruv30012003 asked May 12, 2023 in Q&A · Closed · Unanswered

  

  

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  Tweak YAML file into full compatibility with cobrapy

  haowang-bioinfo started May 9, 2023 in Ideas

  

  

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  Best ways of looking at metabolic flux across cohorts

  manas-kohli asked Apr 11, 2023 in Q&A · Closed · Answered

  

  

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  Error in ftINIT(line 285)

  Mars-hyj asked Apr 3, 2023 in Q&A · Unanswered

  

  

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  What are the units of stoichiometric coefficients of DNA polimerization reaction?

  PkiwiBird asked Apr 3, 2023 in Q&A · Answered

  

  

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  ID mapping services

  mihai-sysbio started Apr 30, 2021 in Ideas

  

  

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  Removing metabolites in Ham's media (essential task) - Task fail

  beherashr asked Feb 3, 2023 in Q&A · Unanswered

  

  

  

  

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