from protein alignments to deep learning preparatory.
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Updated
May 15, 2024 - Python
from protein alignments to deep learning preparatory.
stitching coding regions from exon alignments for the protein to genome alignments.
intergenic region analyzer from protein alignments to draft genomes.
protein-annotator python package for analyzing protein alignments to draft genomes.
alignment visualization and phylogeny plotting for genome aliged regions.
preparing and visualizing proteome to genome alignments
A comparative annotation toolkit (CAT) pipeline for 304 fly genomes.
Pipelines for the production of Treeval data
Phasing reads with secondary alignments
easy_circos is a simple conda package that aims on rapidly and easily creating minimal circos configurations templates based on input data.
ReadXplorer - Visualization and Analysis of Mapped Sequences
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper
command-line interface software for genome alignment
a genome alignment library built around seed-and-extend algorithms for maximal exact and unique matches
Generate interactive dotplot from mummer4 output using plotly
A package for handling whole genome alignments by Pádraic Corcoran and Henry Barton
Parsimonious delimitation of large SNP datasets using the four gamete test
Multiple python implementations that compute the global, local, and end-gap free alignments of genomes.
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