protein-annotator

• a genome annotator based on the protein annnotations functions to analyze and annotate your genome using the protein annotations.

• it provides all the analysis done on the basis of the protein anntoations to the genome.

• provide the reference proteins and the assembled genome and it will provide.

  • generatemRNA

    generatemRNA("/home/gaurav/Desktop/final_code_push/multi.gff", 
                       "/home/gaurav/Desktop/final_code_push/multi.fasta", 
                              "/home/gaurav/Desktop/final_code_push/multiout.fasta")
    

  • generateCDS

    generateCDS("/home/gaurav/Desktop/final_code_push/multi.gff", 
                       "/home/gaurav/Desktop/final_code_push/multi.fasta", 
                              "/home/gaurav/Desktop/final_code_push/multiout.fasta")
    

  • plotCDS

    plotCDS("/home/gaurav/Desktop/final_code_push/multi.gff",
                        "/home/gaurav/Desktop/final_code_push/multi.txt")
    

    
  • plotmRNA

    plotmRNAs("/home/gaurav/Desktop/final_code_push/multi.gff",
                           "/home/gaurav/Desktop/final_code_push/multi.txt")
    

  • extractintergenic

    generateintergenic("/home/gaurav/Desktop/final_code_push/multi.gff",
              "/home/gaurav/Desktop/final_code_push/multi.fasta",
                            "/home/gaurav/Desktop/final_code_push/final.fasta")
    

Installation

$ pip install protein_annotator

Contributing

Interested in contributing? Check out the contributing guidelines. Please note that this project is released with a Code of Conduct. By contributing to this project, you agree to abide by its terms.

License

protein_annotator was created by Gaurav Sablok. It is licensed under the terms of the MIT license. \

Gaurav
Academic Staff Member
Bioinformatics
Institute for Biochemistry and Biology
University of Potsdam
Potsdam,Germany

Credits

protein_annotator was created with cookiecutter and the py-pkgs-cookiecutter template.