Full results to accompany Zhu and Stephens (2018).
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Updated
Mar 28, 2019 - R
Full results to accompany Zhu and Stephens (2018).
Analysis of enrichment of gene sets with a GUI and CLI
Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data
Reference implementation of the paper Redundancy-aware unsupervised ranking based on game theory - application to gene enrichment analysis
enabling pathway analysis of curated chip-seq data
GMT files for the mulea R package
A template package for integrating new pathway databases to ComPath
A resource of gene expression signatures derived from the DEE2 dataset (http://dee2.io)
Web application that enables users to compare the expression of genes or enrichment of gene sets between different molecular subtypes of colorectal cancer
UVA DSI Capstone :: Gene Set Creation Algorithm for Microarray Studies with Low Sample Size
COVID-19 Crowd Generated Gene and Drug Set Library
A web application for exploring, analyzing, and curating pathway databases
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.
Tools to prepare and analyze a priori molecular signatures, such as gene sets.
muleaData is an ExperimentHubData Bioconductor package for the mulea R package
💹 The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center …
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