Bioinformática Hospital de Amor de Barretos.
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Updated
Nov 21, 2018 - Jupyter Notebook
Bioinformática Hospital de Amor de Barretos.
scripts associated with yam genome assembly
Predicting Alzheimer’s disease risk factors from the variant fingerprints of non-AD genes
This project deals with predicting the location of a gene in the human genome based off experimental data
Co-occurrence of enzyme domains
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
A new annotation file format based on JSON, containing all information stored in the GenBank format but with advantageoius parsing and information structure properties.
Optimising the Definitions of Expressed Regions
EMBLish aims to provide a tool for converting gene prediction files such as Maker output file and gene annotation files such as Pannzer2 output file into the EMBL format
A pipeline for identification and annotation of transposable element (TE) insertions using next generation sequencing (NGS) data.
Supplementary code for the paper: Incomplete annotation has a disproportionate impact on our understanding of Mendelian and complex neurogenetic disorders
The related code of the master thesis, "Using deep learning to predict gene structures of the coding genes in DNA sequences of Arabidopsis thaliana"
Package to gather gene information, annotations, and functions
Deep learning methods for feature selection in gene expression autism data.
Annotate DNA sequences for Gene Ontology terms
Visualizing transcript structure and annotation using ggplot2
Command line tools for working with various gene annotation formats.
A minimal desktop app for easy and convenient gene annotation and lookup.
Analysis of different versions of Platypus Gene Annotations from the Ensembl database. Includes a basic frontend to present data, hosted using a Miami class server. The backend is a database containing gene data that a user can query through the frontend.
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