gatk
Here are 67 public repositories matching this topic...
-
Updated
Feb 10, 2017 - Perl
A pipeline for variant calling of Exome using GATK best practice workflow
-
Updated
Mar 16, 2017 - Makefile
-
Updated
Mar 17, 2017 - R
An Efficient Design of a Next Generation Sequencing pipeline with Apache Spark
-
Updated
Apr 6, 2018 - PostScript
Bash and Python pipelines and scripts from the Invertebrates & Microbiology Group at the Queensland University of Technology to help make data analysis easy.
-
Updated
Apr 7, 2018 - Shell
Variant calling + processing pipline using GATK based in Snakemake
-
Updated
May 31, 2018 - Python
This repository contains bash shell scripts
-
Updated
Jun 7, 2018 - R
-
Updated
Jun 26, 2018 - Shell
A pipeline to call variants for RNASeq implemented with python.
-
Updated
Jul 19, 2018
Genome Analysis Toolkit
-
Updated
Dec 13, 2018 - R
Nextflow pipeline for GATK best practices (HaplotypeCaller)
-
Updated
Jul 16, 2019 - Nextflow
Miscellaneous pipelines for genomics computation analysis in a SGE HPC platform.
-
Updated
Jan 15, 2020 - Shell
Improve this page
Add a description, image, and links to the gatk topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the gatk topic, visit your repo's landing page and select "manage topics."