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  1. plasmidID plasmidID Public

    PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

    Shell 37 8

  2. iskylims iskylims Public

    is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

    Python 62 29

  3. buisciii-tools buisciii-tools Public

    set of helper tools for bu-isciii management of its core services portfolio.

    Python 1 12

  4. viralrecon viralrecon Public

    Forked from nf-core/viralrecon

    Assembly and intrahost/low-frequency variant calling for viral samples

    Nextflow 4

  5. BU-ISCIII BU-ISCIII Public

    Our Wiki and main public documentation repository.

    2 7

Repositories

Showing 10 of 65 repositories
  • iskylims Public

    is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

    Python 62 GPL-3.0 29 10 1 Updated May 8, 2024
  • relecov-tools Public

    set of helper tools for the assembly of the different elements in the RELECOV platform (Spanish Network for genomic surveillance of SARS-Cov-2) as data download, processing, validation and upload to public databases, as well as analysis runs and database storage.

    Python 4 GPL-3.0 20 11 0 Updated May 6, 2024
  • buisciii-tools Public

    set of helper tools for bu-isciii management of its core services portfolio.

    Python 1 GPL-3.0 12 34 (1 issue needs help) 1 Updated May 6, 2024
  • taranis Public

    cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.

    Python 5 GPL-3.0 3 0 0 Updated May 2, 2024
  • BU-ISCIII Public

    Our Wiki and main public documentation repository.

  • viralrecon Public Forked from nf-core/viralrecon

    Assembly and intrahost/low-frequency variant calling for viral samples

    Nextflow 0 MIT 98 0 0 Updated Apr 22, 2024
  • virology_training Public

    This repo contains all the resources needed to follow the virology training to analyze viral sequencing data.

    HTML 3 3 0 0 Updated Apr 4, 2024
  • MPXstreveal Public Forked from AnJingwd/STRsearch

    Monkepox STR reveal (MPXstreveal) a new draft approach for detecting and curating low complexity regions in monkeypox genomes using massive parallel sequencing.

    Python 0 MIT 1 0 0 Updated Feb 28, 2024
  • galaxy_virologist_training Public

    Galaxy training for virology profiles

    HTML 0 2 2 0 Updated Nov 15, 2023
  • Python 0 GPL-3.0 3 7 0 Updated Jun 1, 2023

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