gatk4
Here are 37 public repositories matching this topic...
Small GATK alignment and variant calling pipeline using python
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Jul 18, 2022 - Python
Pipeline for calling and analyzing variants from RNA-Seq data
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Nov 7, 2022 - Python
Create required reference genome index files for WGS data analysis
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Aug 3, 2023 - Nextflow
A pipeline for mitochondrial mutation calling
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Jun 19, 2020 - HTML
Variantes genéticas de amostras de Rattus norvegicus utilizando GATK4
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Feb 24, 2021 - HTML
Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples
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Apr 16, 2024 - Python
Evolutionary genomics of chromosomal inversions in Atlantic herring
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Apr 22, 2024 - R
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
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Jul 19, 2023 - JavaScript
School project for the Computational Genomics (2018/2019) course, which is a part of the Master studies at the School of Electrical Engineering, University of Belgrade.
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Aug 7, 2020 - Common Workflow Language
Snakemake pipeline for variant calling using GATK
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Mar 3, 2023 - Python
The snakyVC pipeline is designed for efficiently and parallelly executing variant calling on next-generation sequencing (NGS) whole-genome datasets.
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Apr 7, 2024 - Python
Map and post-process your bams for SNP calling
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Mar 10, 2021 - Python
snakemake pipeline for gatk running on binder
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May 22, 2019 - HTML
An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM files
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Sep 17, 2021 - Python
An interactive visualization tool for GATK CNV analysis. Displays modeled segments and raw read/allele counts.
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May 3, 2024 - JavaScript
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