Pinned

1. Rseb Rseb Public

   An R-package for daily tasks required to handle biological data as well as avoid re-coding of small functions for quick but necessary data management.

   R 1

2. snHiC snHiC Public

   Snakemake pipeline for analysis and normalization of Hi-C data starting from fastq.gz files. It includes the possibility to perform grouped analyses, TAD, loops and stripes detections, as well as d…

   Python 3

3. snakeATAC snakeATAC Public

   Snakemake pipeline for analysis and normalization of ATAC-seq data starting from fastq.gz files.

   Python 2

4. SPACCa SPACCa Public

   Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples

   Python

5. CUTEmake CUTEmake Public

   Snakemake pipeline for analysis and normalization (without SPIKE-IN) of CUT&Tag data starting from fastq.gz files.

6. ChIP_Zwart ChIP_Zwart Public

   ChIP-seq pipeline specific for the Zwart lab

   Python