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Aug 15, 2020 - Python
ena
Here are 18 public repositories matching this topic...
Dresser-un-fonctionnaire.com
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Mar 3, 2024 - HTML
Source codes of API queries in R (made available together with datasets) of Medical Translation in the History of Modern Genomics (TRANSGENE)
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Jul 22, 2019
test
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Oct 26, 2018
R functions and workflow for submitting amplicon sequence data to the ENA.
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Apr 17, 2024 - R
Query the ENA for different types of data and bulk download
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Nov 7, 2019 - Python
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Jun 15, 2023 - Shell
OMD Curation Toolkit is a python package designed for the download and curation of metadata and fastq files of public omics datasets.
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May 10, 2024 - Python
Snakemake workflow to upload Sars-Cov-2 reads to ENA
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Apr 26, 2021 - Python
TSV and XLSX templates for submitting ENA objects (study, experiment, sample and run) using the ENA-upload-tool
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May 28, 2024 - Python
Collecting Genotypes from ENA and make their SNPs
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Sep 27, 2021 - Python
Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.
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May 1, 2022 - Python
An efficient way to convert gff3 annotation files into EMBL format ready to submit.
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Mar 14, 2024 - Python
Package for fetching metadata and downloading data from SRA/ENA/GEO
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Sep 17, 2023 - Python
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