Pinned

1. Bash_scripts Bash_scripts Public

   Custom Bash Shell scripts for use with AntiSMASH and Biosynthetic MetaSpades data outputs (fasta/GenBank). Scripts carry out file management, data parsing and data QC

   Shell

2. groupnextflow groupnextflow Public

   Hi-C Nextflow script and Singularity container for a collaborative group MSc project.

   Nextflow 1

3. Nextflow_AntiSMASH Nextflow_AntiSMASH Public

   Custom Nextflow scripts for microbiome assembly and AntiSMASH BGC analyses. Based around microbiome assemblers: Megahit & MetaSpades

   Nextflow

4. Python_GC_distribution_Script Python_GC_distribution_Script Public

   Python script for taking in Genbank accession codes for organsims genomes and runs an analsyis to determine if there is a link between gene length distibutions and the size of the organisms genomes

   Jupyter Notebook

5. R_shiny R_shiny Public

   R-shiny app for processing differential gene expression data

   R

6. thesisreal thesisreal Public

   My final thesis project work from my Biomedical Genomics MSc undertaken at NUIG, 2021. Includes Nextflow, Snakemake, Bash, Python and R scripts.

   Jupyter Notebook