De novo genome assembly and multisample variant calling
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Updated
Mar 28, 2019 - C
De novo genome assembly and multisample variant calling
Core library of the Genome Analysis Toolbox with de-Bruijn graph
A fast whole-genome aligner based on de Bruijn graphs
A fast constructor of the compressed de Bruijn graph from many genomes
Fulgor is a fast and space-efficient colored de Bruijn graph index.
ProphAsm – a rapid computation of simplitigs directly from k-mer sets
Genome assembler de novo that uses De Bruijn graph.
Germline DNM caller based on LdBG assembly of pathogens
Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads
Streaming de Bruijn and Compact de Bruijn Graph Algorithms
Find bubbles in the Colored de Bruijn Graph to reconstruct phylogenetic trees
GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data
Enumerates Conway's Game of Life's "still lifes" (fixed points) via De Bruijn diagrams. Caml light implementation (boo !)
Data Analysis for Genomics, De Bruijn Graph for Genome Assembly.
Beginig of the expansion of DBGWAS to a metagenomic scale.
Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.
Computational Biology Assignments
A program which can assembing .fasta file generated by Next Generation Sequencing(NGS) de novo using De Bruijn Graph Algorithm, and can also choose to map(BLAST) the contigs to a reference sequence
Sparse Binary Relation Representations for Genome Graph Annotation
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