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@ratschlab

Biomedical Informatics at ETH Zurich

Popular repositories

  1. RGAN RGAN Public

    Recurrent (conditional) generative adversarial networks for generating real-valued time series data.

    Python 628 182

  2. SOM-VAE SOM-VAE Public

    TensorFlow implementation of the SOM-VAE model as described in https://arxiv.org/abs/1806.02199

    Python 187 32

  3. GP-VAE GP-VAE Public

    TensorFlow implementation for the GP-VAE model described in https://arxiv.org/abs/1907.04155

    Python 122 24

  4. spladder spladder Public

    Tool for the detection and quantification of alternative splicing events from RNA-Seq data.

    Python 101 32

  5. metagraph metagraph Public

    Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

    C++ 86 14

  6. dpsom dpsom Public

    Code associated with ACM-CHIL 21 paper 'T-DPSOM - An Interpretable Clustering Method for Unsupervised Learning of Patient Health States'

    Python 65 17

Repositories

Showing 10 of 101 repositories
  • spladder Public

    Tool for the detection and quantification of alternative splicing events from RNA-Seq data.

    Python 101 32 28 1 Updated Apr 19, 2024
  • metagraph Public

    Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

    C++ 86 GPL-3.0 14 5 10 Updated Apr 18, 2024
  • sshash Public Forked from jermp/sshash

    A compressed, associative, exact, and weighted dictionary for k-mers.

    C++ 0 MIT 14 0 0 Updated Apr 18, 2024
  • ricu Public Forked from eth-mds/ricu

    🏥 ICU data with R 🏥

    R 0 GPL-3.0 9 1 1 Updated Apr 16, 2024
  • AKI-EWS Public
    HTML 0 MIT 0 0 0 Updated Apr 14, 2024
  • pmvae Public

    Code for pmVAE model, seen in ICML CompBio '21

    Jupyter Notebook 12 MIT 0 0 0 Updated Apr 12, 2024
  • M.Sc.-thesis-Marc-Egli-Inf-Extr Public Forked from maregli/inf-extr

    This GitHub Repo contains all the code for the Master Thesis Utilizing Deep Language Models for the Medical Information Extraction. The data is on a secure cluster.

    Jupyter Notebook 0 1 0 0 Updated Apr 7, 2024
  • mla Public

    Scripts and data for reproducing the results of MetaGraph-MLA

    Jupyter Notebook 2 GPL-3.0 0 0 0 Updated Mar 28, 2024
  • famews Public

    FAMEWS: A Fairness Auditing tool for Medical Early-Warning Systems

    Python 0 MIT 0 0 0 Updated Mar 19, 2024
  • sim_read_until Public

    Simulator of an ONT device with ReadUntil gRPC support

    Jupyter Notebook 3 MIT 0 1 0 Updated Mar 6, 2024

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