Beginig of the expansion of DBGWAS to a metagenomic scale.
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Updated
Jun 21, 2023 - JavaScript
Beginig of the expansion of DBGWAS to a metagenomic scale.
Data Analysis for Genomics, Euler Path for Genome Assembly.
Benchmarks and evaluation scripts for the Fulgor index.
Probabilistic genome assembler based on de Bruijn Graph and profile HMM
Data Analysis for Genomics, De Bruijn Graph Chain Merging Compacting.
Data Analysis for Genomics, De Bruijn Graph for Genome Assembly.
What I learned from Data Structures and Algorithms Specialization on Coursera.
Souce code for my MSc Thesis in Computer Science “Nested Marvellous Sequences”
Enumerates Conway's Game of Life's "still lifes" (fixed points) via De Bruijn diagrams. Caml light implementation (boo !)
A program which can assembing .fasta file generated by Next Generation Sequencing(NGS) de novo using De Bruijn Graph Algorithm, and can also choose to map(BLAST) the contigs to a reference sequence
Genome assembler de novo that uses De Bruijn graph.
Computational Biology Assignments
Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.
Sparse Binary Relation Representations for Genome Graph Annotation
Streaming de Bruijn and Compact de Bruijn Graph Algorithms
Germline DNM caller based on LdBG assembly of pathogens
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